species:   Rhsol
pid:       PID0611
parent:    Rhi-milR-5
paralog:   
locus:     KB317703.1:887-999
matures:   ['AAGGAAUGGGUUGAAUGCUGCC', 'CAGCAAAGGACCCUAGAACUCCUCAG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317703.1:887-999

0 out of bounds
5 alignments
3 proper strand
2 stranded perfect matches

     ************************                                             ********************                   
ACCCAGGCCAGCAAAGGACCCUAGAACUCCUCAGCCGCAACUAUUGGUGGCCAGGUAUGAAGUUGUCAGCUAAGGAAUGGGUUGAAUGCUGCCCAGUAUGCCAAGCUAACCGU
.....((.(((((...(((((......((((.(((.((((((..(.(((......))).)))))))..))).))))..)))))...))))).))...................
-----------------------------------------------------------------------AAGGAAUGGGUUGAAUGCUGCC-------------------- l=22 a=0 c
--------CAGCAAAGGACCCUAGAACUCCUCAG------------------------------------------------------------------------------- l=26 a=0 c*
-------CCAGCAAAGGACCCUAGAACUC------------------------------------------------------------------------------------ l=22 a=2 ma
----------------------------------------------------------------------------AUGGGUUGAAUGCUGCCC------------------- l=18 a=0 ma*

-------CCAGCAAAGGACCCUAGAACUC------------------------------------------------------------------------------------ l=22 a=2 (ma)
-------------AAGGACCCUAGAACUCCUCAGCCa---------------------------------------------------------------------------- l=24 a=1 

mb-00010
ax-1001011
ku-01
ss-111110101000
fn-001
